Description
The Module_Properties format will output a table with one module on each row
and with columns containing information about different module properties
chosen by the user.
Example of properties output with the format string "
ID, Size, Max IC, Motifs" (with header)
#ID Size Max IC Motifs
MOD0040 3 43.5204389330021 NFKAPPAB65,SP1,EGR2
MOD0078 3 54.12787872722569 STAT,TITF1,STAT3
MOD0081 3 39.159961609322714 P300,STAT,IRF7
MOD0069 6 95.6314848710252 AP1FJ,STAT,AP1,CREBP1CJUN,STAT1,STAT3
MOD0070 4 76.28839485773265 STAT,IRF1,STAT1,ISRE
MOD0101 2 42.324578249877625 NRSE,MTATA
MOD0105 2 38.59871626791364 PAX5,MTATA
| Name | Description |
|---|
| Format |
This parameter specifies which module properties to include in the output
as an ordered, comma-separated list of property names.
Note that standard properties are case-insensitive, but user-defined
properties are case-sensitive!
Standard module properties include:
- ID
- Cardinality (or: Size)
- Consensus
- Motifs
- Ordered
- Oriented
- Max length
- Min IC
- Max IC
|
| Separator |
This parameter specifies how to separate the module properties on each
line in the output. The character chosen as the separator will replace
the commas in the format string above.
Valid options for the separator are "TAB" (default), "Comma",
"Semicolon", "Colon" and "Vertical bar".
|
| List-separator |
Some smodule properties may be represented by lists (e.g. GO-terms). The "List-separator" parameter specifies
how to separate the entries in such lists. Valid options are
"Comma" (default), "TAB", "Semicolon", "Colon" and "Vertical bar". Note that this separator should be different from the
separator used to separate the module properties that are output.
|
| Header |
If this option is selected, a header line starting with # will be
included at the beginning of the output. The header line describes which
module properties are included.
|